4.  Solvent-flattening, Map Calculation and Display

The calculated phase information will reside in a new hkl file called 124_sirsas_phase.hkl

To run solvent flattening, download the file density_modify.inp, edit it with cns_edit (it should be ready to go) and run it by typing:

% cns < density_modify.inp |tee dm.log

This will take awhile but will eventually reward you with a map file called  density_modify_siras.map

To see how this looks, download the coordinates and the following pymol script that I called mapcheck.pml

Display everything by typing

% mv density_modify_siras.map dm.xplor  

% pymol mapcheck.pml

Here is a screenshot of how the map ought to look when displayed with pymol: